In press

• S. Balci, A. Kocabas, C. Kocabas, A. Aydinli, “Localization of Surface Plasmon Polaritons in Hexagonal Arrays of Moire Cavities,” accepted for publication in Applied Physics Letters

2010

• S. Balci, A. Kocabas, C. Kocabas, A. Aydinli, “Slowing surface plasmon polaritons on plasmonic coupled cavities by tuning grating grooves,” Applied Physics Letters, vol. 97, pp. 131103-1–3 (2010)
• S. Balci, M. Karabiyik, A. Kocabas, C. Kocabas, A. Aydinli, “Coupled Plasmonic Cavities on Moire Surfaces,” Plasmonics, vol. 5, pp. 429-436 (2010)

2009

• P. Basa, P. Petrik, M. Fried, A. Dana, A. Aydinli, S. Fossi, T.G. Finstad, “Spectroscopic Ellipsometric Study of Ge Nanocrystals Embedded in SiO₂ Using Parametric Models,” Physica Status Solidi A, vol. 5, pp. 1332-1336 (2009)
• A. Kocabas, S.S. Senlik, A. Aydinli, “Slowing Down Surface Plasmons on a Moire Surface,” Physical Review Letters, vol. 102, pp. 063901-1–4 (2009)
• S. Olcum, A. Kocabas, G. Ertas, A. Atalar, A. Aydinli, “Tunable surface plasmon resonance on an elastomeric substrate,” Optics Express, vol. 17, pp. 8542-8547 (2009)
• S.S. Senlik, A. Kocabas, A. Aydinli, “Grating based plasmonic band gap cavities,” Optics Express, vol. 17, pp. 15541-15549 (2009)

2008

• I.B. Akca, A. Dana, A. Aydinli, M. Rossetti, L. Li, A. Fiore, N. Dagli, “Electro-Optic and Electro-absorption characterization of InAs quantum dot waveguides,” Optics Express, vol. 16, pp. 3439-3444 (2008)
• I.B. Akca, A. Dana, A. Aydinli, R. Turan, “Comparison of Electron and Hole Charge-Discharge Dynamics in Germanium Nanocrystal Flash Memories,” Applied Physics Letters, vol. 92, pp. 052103-1–3 (2008)
• A. Dana, I. Akca, A. Aydinli, R. Turan, T.G. Finstad, “A Figure of Merit for Optimization of Nanocrystal Flash Memory Design,” J of Nanoscience and Nanotechnology, vol. 8, pp. 510-517 (2008)

2007

• A. Dana, I. Akca, O. Ergun, R. Turan, T. Finstad, A. Aydinli, “Charge retention in quantized energy levels of nanocrystals,” Physica E, vol. 38, pp. 94-98 (2007)
• S. Foss, T.G. Finstad, A. Dana, A. Aydinli, “Growth of Ge Nanoparticles on SiO2/Si interfaces during Annealing of Plasma Enhanced Chemical Vapor Deposited Thin Films,” Thin Solid Films, vol. 515, pp. 6281 (2007)

2006

• S. Agan, A. Celik-Aktas, J.M. Zuo, A. Dana, A. Aydinli, “Synthesis and size differentiation of Ge nanocystals in amorphous SiO2,” Applied Physics A Materials Science & Processing, vol. 83, pp. 107-110 (2006)
• S. Agan, A. Dana, A. Aydinli, “TEM studies of Ge nanocrystal formation in PECVD grown SiO2:Ge/SiO2 Multilayers,” J of Physics Condensed Matter, vol. 18, pp. 5037-5045 (2006)
• A. Dana, S. Tokay, A. Aydinli, “Formation of Ge nanocrystals and SiGe in PECVD grown SiNx:Ge thin films,” Materials Science in Semiconductor Processing, vol. 9, pp. 848-852 (2006)
• A. Dane, U.K. Demirok, A. Aydinli, S. Suzer, “X-ray Photoelectron Spectroscopic Analysis of Si Nanoclusters in SiO2 Matrix,” J of Physical Chemistry B, vol. 110, pp. 1137-1140 (2006)
• I. Kiyat, A. Aydinli, N. Dagli, “Low-Power Thermooptical Tuning of SOI Resonator Switch,” IEEE Photonics Technology Letters, vol. 18, pp. 364-366 (2006)
• A. Kocabas, F. Ay, A. Dana, A. Aydinli, “An elastomeric grating coupler,” J of Optics A – Pure and Applied Optics, vol. 8, pp. 85-87 (2006)
• A. Kocabas, A. Aydinli, “Polymeric waveguide Bragg grating filter using soft lithography,” Optics Express, vol. 14, pp. 10228-10232 (2006)
• A. Kocabas, A. Dana, A. Aydinli, “Excitation of a surface plasmon with an elastromeric gratting,” Applied Physics Letters, vol. 89, pp. 041123-1–3 (2006)
• L. Razzani, A. Gnoli, M. Righini, A. Dana, A. Aydinli, “Excited-state dynamics and nonlinear optical response of Ge nanocystals embedded in silica matrix,” Applied Physics Letters, vol. 88, pp. 181901-1–3 (2006)
• S. Yerli, U. Serincan, I. Dogan, S. Tokay, M. Genisel, A. Aydinli, R. Turan, “Formation of silicon nanocrystals in sapphire by ion implantation and the origin of visible photoluminescence,” J Applied Physics, vol. 100, pp. 074301-1–5 (2006)
• P. Zorlutuna, A. Tezcaner, I. Kiyat, A. Aydinli, V. Hasirci, “Cornea engineering on polyester carriers,” J of Biomed Mater Res A, vol. 79, pp. 104-113 (2006)

2005

• S. Agan, F. Ay, A. Kocabas, A. Aydinli, “Stress effects in prism coupling measurements of thin polymer films,” Applied Physics A Materials Science & Processing, vol. 80, pp. 341-345 (2005)
• K. Goksen, N.M. Gasanly, H. Ozkan, A. Aydinli, “Donor-acceptor pair recombination in tl2InGaS4 layered crystals,” J of Korean Phys. Soc., vol. 47, pp. 267-271 (2005)
• I. Kiyat, A. Aydinli, N. Dagli, “Polarization Characteristics of Compact SOI Rib Waveguide RaceTrack Resonators,” IEEE Photonics Technology Letters, vol. 17, pp. 2098-2100 (2005)
• I. Kiyat, A. Aydinli, N. Dagli, “A Compact Silicon-on-insulator Polarization Splitter,” IEEE Photonics Technology Letters, vol. 17, pp. 100-102 (2005)
• I. Kiyat, A. Aydinli, N. Dagli, “High-Q silicon-on-insulator optical rib waveguide racetrack resonators,” Optics Express, vol. 13, pp. 1900-1905 (2005)
• A. Kocabas, F. Ay, A. Dana, A. Kiyat, A. Aydinli, “High-refractive-index measurement with an elastromeric grating coupler,” Optics Letters, vol. 30, pp. 3150-3152 (2005)
• C. Kocabas, A. Aydinli, “Design and analysis of integrated optical sensors for scanning probe microscopies,” IEEE Sensors Journal, vol. 5, pp. 411-418 (2005)